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1

Steady-State Kinetic Modeling Constrains Cellular Resting States and Dynamic Behavior

Purvis, Jeremy E., Radhakrishnan, Ravi, Diamond, Scott L., Rao, Christopher

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 950 KB

english, 2009

2

次世代の細胞運命を決める記憶

Kedziora, Katarzyna M., Purvis, Jeremy E.

Journal:

Year:

2017

File:

PDF, 1.12 MB

2017

3

Accurate delineation of cell cycle phase transitions in living cells with PIP-FUCCI

Grant, Gavin D., Kedziora, Katarzyna M., Limas, Juanita C., Cook, Jeanette Gowen, Purvis, Jeremy E.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.25 MB

english, 2018

4

Encoding and Decoding Cellular Information through Signaling Dynamics

Purvis, Jeremy E., Lahav, Galit

Journal:

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

5

Type V Collagen–induced Tolerance Prevents Airway Hyperresponsiveness

Lott, Jeremy M., Sehra, Sarita, Mehrotra, Purvi, Mickler, Elizabeth A., Fisher, Amanda J., Zhang, Wenwu, Presson, Robert G., Busk, Michael F., Goenka, Shreevrat, Gunst, Susan J., Kaplan, Mark H., Wilk

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2013

Language:

english

File:

PDF, 337 KB

english, 2013

6

The Cell Cycle Browser: An Interactive Tool for Visualizing, Simulating, and Perturbing Cell-Cycle Progression

Borland, David, Yi, Hong, Grant, Gavin D., Kedziora, Katarzyna M., Chao, Hui Xiao, Haggerty, Rachel A., Kumar, Jayashree, Wolff, Samuel C., Cook, Jeanette G., Purvis, Jeremy E.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

7

Molecular Docking of Cathepsin L Inhibitors in the Binding Site of Papain

Beavers, Mary Pat, Myers, Michael C., Shah, Parag P., Purvis, Jeremy E., Diamond, Scott L., Cooperman, Barry S., Huryn, Donna M., Smith, Amos B.

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 2.26 MB

english, 2008

8

A Multiscale Computational Approach to Dissect Early Events in the Erb Family Receptor Mediated Activation, Differential Signaling, and Relevance to Oncogenic Transformations

Yingting Liu, Jeremy Purvis, Andrew Shih, Joshua Weinstein, Neeraj Agrawal, Ravi Radhakrishnan

Journal:

Annals of Biomedical Engineering

Year:

2007

Language:

english

File:

PDF, 611 KB

english, 2007

9

Role of Network Branching in Eliciting Differential Short-Term Signaling Responses in the Hypersensitive Epidermal Growth Factor Receptor Mutants Implicated in Lung Cancer

Jeremy Purvis, Vibitha Ilango, Ravi Radhakrishnan

Journal:

Biotechnology Progress

Year:

2008

Language:

english

File:

PDF, 582 KB

english, 2008

10

Computational analysis of signaling patterns in single cells

Davis, Denise M., Purvis, Jeremy E.

Journal:

Seminars in Cell & Developmental Biology

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

11

SPIE Proceedings [SPIE San Diego, '91, San Diego, CA - San Diego, CA (Sunday 21 July 1991)] International Conference on the Application and Theory of Periodic Structures - Investigation of fringing fields in liquid-crystal devices

Powell, Norman J., Kelsall, Robert W., Love, Gordon D., Purvis, Alan, Lerner, Jeremy M., McKinney, Wayne R.

Year:

1991

Language:

english

File:

PDF, 379 KB

english, 1991

12

Phosphodiester content measured in human liver by in vivo 31 P MR spectroscopy at 7 tesla

Purvis, Lucian A.B., Clarke, William T., Valkovič, Ladislav, Levick, Christina, Pavlides, Michael, Barnes, Eleanor, Cobbold, Jeremy F., Robson, Matthew D., Rodgers, Christopher T.

Journal:

Magnetic Resonance in Medicine

Year:

2017

Language:

english

File:

PDF, 682 KB

english, 2017

13

[ACM Press the Practice and Experience in Advanced Research Computing - Chicago, IL, USA (2019.07.28-2019.08.01)] Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning) - PEARC '19 - In and out of the nucleus

Zikry, Tarek M., Kedziora, Katarzyna M., Kosorok, Michael R., Purvis, Jeremy E.

Year:

2019

Language:

english

File:

PDF, 1.26 MB

english, 2019

14

Evidence that the human cell cycle is a series of uncoupled, memoryless phases

Chao, Hui Xiao, Fakhreddin, Randy I, Shimerov, Hristo K, Kedziora, Katarzyna M, Kumar, Rashmi J, Perez, Joanna, Limas, Juanita C, Grant, Gavin D, Cook, Jeanette Gowen, Gupta, Gaorav P, Purvis, Jeremy

Journal:

Molecular Systems Biology

Year:

2019

Language:

english

File:

PDF, 1.67 MB

english, 2019

15

Pairwise agonist scanning predicts cellular signaling responses to combinatorial stimuli

Chatterjee, Manash S, Purvis, Jeremy E, Brass, Lawrence F, Diamond, Scott L

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 1.22 MB

english, 2010

16

Autophagy regulates the localization and degradation of p16 INK4a

Coryell, Philip R., Goraya, Supreet K., Griffin, Katherine A., Redick, Margaret A., Sisk, Samuel R., Purvis, Jeremy E.

Journal:

Year:

2020

File:

PDF, 1.88 MB

2020

17

Orchestration of DNA Damage Checkpoint Dynamics across the Human Cell Cycle

Chao, Hui Xiao, Poovey, Cere E., Privette, Ashley A., Grant, Gavin D., Chao, Hui Yan, Cook, Jeanette G., Purvis, Jeremy E.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.21 MB

english, 2017

18

Molecular systems biology of ErbB1 signaling: bridging the gap through multiscale modeling and high-performance computing

Shih, Andrew J., Purvis, Jeremy, Radhakrishnan, Ravi

Journal:

Molecular BioSystems

Year:

2008

Language:

english

File:

PDF, 4.20 MB

english, 2008

19

Multi-Scale Imaging and Informatics Pipeline for In Situ Pluripotent Stem Cell Analysis

Gorman, Bryan R., Lu, Junjie, Baccei, Anna, Lowry, Nathan C., Purvis, Jeremy E., Mangoubi, Rami S., Lerou, Paul H., Panepucci, Rodrigo Alexandre

Journal:

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

20

Chemical screen for epigenetic barriers to single allele activation of Oct4

Headley, Kathryn M., Kedziora, Katarzyna M., Alejo, Aidin, Lai, Elianna Zhi-Xiang, Purvis, Jeremy E., Hathaway, Nathaniel A.

Journal:

Stem Cell Research

Year:

2019

Language:

english

File:

PDF, 763 KB

english, 2019

21

[American Thoracic Society American Thoracic Society 2012 International Conference, May 18-23, 2012 â¢ San Francisco, California - ()] C37. MEDIATORS OF ASTHMA AND ALLERGIC LUNG DISEASE - Type V Collagen-Induced Tolerance Down Regulates Local Production Of C3a And IL17 In Allergic Airways Disease

Lott, Jeremy M., Sehra, Sarita, Mehrotra, Purvi, Goenka, Shreevrat, Wenzel, Sally E., Kaplan, Mark, Wilkes, David S.

Year:

2012

File:

PDF, 18 KB

2012

22

Systems biology of platelet-vessel wall interactions

Diamond, Scott L., Purvis, Jeremy, Chatterjee, Manash, Flamm, Matthew H.

Journal:

Frontiers in Physiology

Year:

2013

Language:

english

File:

PDF, 3.42 MB

english, 2013

23

Decoding the Insulin Signal

Jeremy E. Purvis, Galit Lahav

Journal:

Year:

2012

Language:

english

File:

PDF, 127 KB

english, 2012

24

Molecular Docking of Cathepsin L Inhibitors in the Binding Site of Papain

Beavers, Mary Pat, Myers, Michael C., Shah, Parag P., Purvis, Jeremy E., Diamond, Scott L., Cooperman, Barry S., Huryn, Donna M., Smith, Amos B.

Journal:

Journal of Chemical Information and Modeling

Year:

2010

File:

PDF, 18 KB

2010

25

Genetic determinants of cellular addiction to DNA polymerase theta

Feng, Wanjuan, Simpson, Dennis A., Carvajal-Garcia, Juan, Price, Brandon A., Kumar, Rashmi J., Mose, Lisle E., Wood, Richard D., Rashid, Naim, Purvis, Jeremy E., Parker, Joel S., Ramsden, Dale A., Gup

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 3.81 MB

english, 2019

26

Natural language processing: put your model where your mouth is

Haggerty, Rachel A, Purvis, Jeremy E

Journal:

Molecular Systems Biology

Year:

2017

Language:

english

File:

PDF, 554 KB

english, 2017

27

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

Hafner, Antonina, Stewart-Ornstein, Jacob, Purvis, Jeremy E, Forrester, William C, Bulyk, Martha L, Lahav, Galit

Journal:

Nature Structural and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 2.30 MB

english, 2017

28

Cell biology: The persistence of memory

Kedziora, Katarzyna M., Purvis, Jeremy E.

Journal:

Year:

2017

Language:

english

File:

PDF, 289 KB

english, 2017

29

Inheritance of OCT4 predetermines fate choice in human embryonic stem cells

Wolff, Samuel C, Kedziora, Katarzyna M, Dumitru, Raluca, Dungee, Cierra D, Zikry, Tarek M, Beltran, Adriana S, Haggerty, Rachel A, Cheng, JrGang, Redick, Margaret A, Purvis, Jeremy E

Journal:

Molecular Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

30

Bistable switches as integrators and actuators during cell cycle progression

Stallaert, Wayne, Kedziora, Katarzyna M., Chao, Hui Xiao, Purvis, Jeremy E.

Journal:

Year:

2019

Language:

english

File:

PDF, 329 KB

english, 2019

31

Chemical screen for epigenetic barriers to single allele activation of Oct4

Headley, Kathryn M., Kedziora, Katarzyna M., Alejo, Aidin, Lai, Elianna Zhi-Xiang, Purvis, Jeremy E., Hathaway, Nathaniel A.

Journal:

Stem Cell Research

Year:

2019

File:

PDF, 763 KB

2019

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